Extended dry run: examples¶
Output examples for eb --extended-dry-run/eb -x, see also Extended dry run.
make v3.82 with GCC/4.8.2¶
$ eb make-3.82-GCC-4.8.2.eb -x
== temporary log file in case of crash /tmp/eb-ksVC07/easybuild-MmAugb.log
== processing EasyBuild easyconfig /home/example/eb/easybuild-easyconfigs/easybuild/easyconfigs/m/make/make-3.82-GCC-4.8.2.eb
Important note: the actual build & install procedure that will be performed may diverge
(slightly) from what is outlined below, due to conditions in the easyblock which are
incorrectly handled in a dry run.
Any errors that may occur are ignored and reported as warnings, on a per-step basis.
Please be aware of this, and only use the information below for quick debugging purposes.
*** DRY RUN using 'ConfigureMake' easyblock (easybuild.easyblocks.generic.configuremake @ /home/example/eb/easybuild-easyblocks/easybuild/easyblocks/generic/configuremake.pyc) ***
== building and installing make/3.82-GCC-4.8.2...
fetching files... [DRY RUN]
[fetch_step method]
Available download URLs for sources/patches:
* http://ftpmirror.gnu.org/make/$source
List of sources:
* make-3.82.tar.bz2 will be downloaded to /home/example/eb/sources/m/make/make-3.82.tar.bz2
List of patches:
(none)
creating build dir, resetting environment... [DRY RUN]
[check_readiness_step method]
[make_builddir method]
[reset_changes method]
[handle_iterate_opts method]
unpacking... [DRY RUN]
[checksum_step method]
* expected checksum for make-3.82.tar.bz2: (none)
[extract_step method]
running command "tar xjf /home/example/eb/sources/m/make/make-3.82.tar.bz2"
(in /home/example/eb/build/make/3.82/GCC-4.8.2)
patching... [DRY RUN]
[patch_step method]
preparing... [DRY RUN]
[prepare_step method]
Defining build environment, based on toolchain (options) and specified dependencies...
Loading toolchain module...
module load GCC/4.8.2
Loading modules for dependencies...
Full list of loaded modules:
1) GCC/4.8.2
Defining build environment...
export CC="gcc"
export CFLAGS="-O2"
export CXX="g++"
export CXXFLAGS="-O2"
export F77="gfortran"
export F90="gfortran"
export F90FLAGS="-O2"
export FFLAGS="-O2"
export FLIBS="-lgfortran"
export LDFLAGS="-L/home/example/eb/software/GCC/4.8.2/lib"
export LIBS="-lm -lpthread"
export OPTFLAGS="-O2"
export PRECFLAGS=""
configuring... [DRY RUN]
[configure_step method]
running command " ./configure --prefix=/home/example/eb/software/make/3.82-GCC-4.8.2 "
(in /home/example/eb/build/make/3.82/GCC-4.8.2/make-3.82)
building... [DRY RUN]
[build_step method]
running command " make -j 4 "
(in /home/example/eb/build/make/3.82/GCC-4.8.2/make-3.82)
testing... [DRY RUN]
[test_step method]
installing... [DRY RUN]
[stage_install_step method]
[make_installdir method]
[install_step method]
running command " make install "
(in /home/example/eb/build/make/3.82/GCC-4.8.2/make-3.82)
taking care of extensions... [DRY RUN]
[extensions_step method]
postprocessing... [DRY RUN]
[post_install_step method]
sanity checking... [DRY RUN]
[sanity_check_step method]
Sanity check paths - file ['files']
* bin/make
Sanity check paths - (non-empty) directory ['dirs']
(none)
Sanity check commands
(none)
cleaning up... [DRY RUN]
[cleanup_step method]
creating module... [DRY RUN]
[make_module_step method]
Generating module file /home/example/eb/modules/all/make/3.82-GCC-4.8.2, with contents:
#%Module
proc ModulesHelp { } {
puts stderr { make-3.82: GNU version of make utility - Homepage: http://www.gnu.org/software/make/make.html
}
}
module-whatis {Description: make-3.82: GNU version of make utility - Homepage: http://www.gnu.org/software/make/make.html}
set root /home/example/eb/software/make/3.82-GCC-4.8.2
conflict make
if { ![ is-loaded GCC/4.8.2 ] } {
module load GCC/4.8.2
}
setenv EBROOTMAKE "$root"
setenv EBVERSIONMAKE "3.82"
setenv EBDEVELMAKE "$root/easybuild/make-3.82-GCC-4.8.2-easybuild-devel"
# Built with EasyBuild version 2.4.0
permissions... [DRY RUN]
[permissions_step method]
packaging... [DRY RUN]
[package_step method]
== COMPLETED: Installation ended successfully
Important note: the actual build & install procedure that will be performed may diverge
(slightly) from what is outlined above, due to conditions in the easyblock which are
incorrectly handled in a dry run.
Any errors that may occur are ignored and reported as warnings, on a per-step basis.
Please be aware of this, and only use the information above for quick debugging purposes.
(no ignored errors during dry run)
== Build succeeded for 1 out of 1
== Temporary log file(s) /tmp/eb-ksVC07/easybuild-MmAugb.log* have been removed.
== Temporary directory /tmp/eb-ksVC07 has been removed.
WRF v3.6.1 with intel/2015a¶
$ eb WRF-3.6.1-intel-2015a-dmpar.eb -x
== temporary log file in case of crash /tmp/eb-Dh1wOp/easybuild-0bu9u9.log
== processing EasyBuild easyconfig /home/example/eb/easybuild-easyconfigs/easybuild/easyconfigs/w/WRF/WRF-3.6.1-intel-2015a-dmpar.eb
Important note: the actual build & install procedure that will be performed may diverge
(slightly) from what is outlined below, due to conditions in the easyblock which are
incorrectly handled in a dry run.
Any errors that may occur are ignored and reported as warnings, on a per-step basis.
Please be aware of this, and only use the information below for quick debugging purposes.
*** DRY RUN using 'EB_WRF' easyblock (easybuild.easyblocks.wrf @ /home/example/eb/easybuild-easyblocks/easybuild/easyblocks/w/wrf.py) ***
== building and installing WRF/3.6.1-intel-2015a-dmpar...
fetching files... [DRY RUN]
[fetch_step method]
Available download URLs for sources/patches:
* http://www2.mmm.ucar.edu/wrf/src//$source
* http://www.mmm.ucar.edu/wrf/src//$source
List of sources:
* WRFV3.6.1.TAR.gz will be downloaded to /home/example/eb/sources/w/WRF/WRFV3.6.1.TAR.gz
List of patches:
* WRF_parallel_build_fix.patch found at /home/example/eb/easybuild-easyconfigs/easybuild/easyconfigs/w/WRF/WRF_parallel_build_fix.patch
* WRF-3.6.1_netCDF-Fortran_separate_path.patch found at /home/example/eb/easybuild-easyconfigs/easybuild/easyconfigs/w/WRF/WRF-3.6.1_netCDF-Fortran_separate_path.patch
* WRF-3.6.1_known_problems.patch found at /home/example/eb/easybuild-easyconfigs/easybuild/easyconfigs/w/WRF/WRF-3.6.1_known_problems.patch
* WRF_tests_limit-runtimes.patch found at /home/example/eb/easybuild-easyconfigs/easybuild/easyconfigs/w/WRF/WRF_tests_limit-runtimes.patch
creating build dir, resetting environment... [DRY RUN]
[check_readiness_step method]
[make_builddir method]
[reset_changes method]
[handle_iterate_opts method]
unpacking... [DRY RUN]
[checksum_step method]
* expected checksum for WRFV3.6.1.TAR.gz: (none)
* expected checksum for WRF_parallel_build_fix.patch: (none)
* expected checksum for WRF-3.6.1_netCDF-Fortran_separate_path.patch: (none)
* expected checksum for WRF-3.6.1_known_problems.patch: (none)
* expected checksum for WRF_tests_limit-runtimes.patch: (none)
[extract_step method]
running command "tar xzf /home/example/eb/sources/w/WRF/WRFV3.6.1.TAR.gz"
(in /home/example/eb/software/WRF/3.6.1-intel-2015a-dmpar)
patching... [DRY RUN]
[patch_step method]
* applying patch file WRF_parallel_build_fix.patch
running command "patch -b -p<derived> -i /home/example/eb/easybuild-easyconfigs/easybuild/easyconfigs/w/WRF/WRF_parallel_build_fix.patch"
(in /home/example/eb/software/WRF/3.6.1-intel-2015a-dmpar)
* applying patch file WRF-3.6.1_netCDF-Fortran_separate_path.patch
running command "patch -b -p<derived> -i /home/example/eb/easybuild-easyconfigs/easybuild/easyconfigs/w/WRF/WRF-3.6.1_netCDF-Fortran_separate_path.patch"
(in /home/example/eb/software/WRF/3.6.1-intel-2015a-dmpar)
* applying patch file WRF-3.6.1_known_problems.patch
running command "patch -b -p<derived> -i /home/example/eb/easybuild-easyconfigs/easybuild/easyconfigs/w/WRF/WRF-3.6.1_known_problems.patch"
(in /home/example/eb/software/WRF/3.6.1-intel-2015a-dmpar)
* applying patch file WRF_tests_limit-runtimes.patch
running command "patch -b -p<derived> -i /home/example/eb/easybuild-easyconfigs/easybuild/easyconfigs/w/WRF/WRF_tests_limit-runtimes.patch"
(in /home/example/eb/software/WRF/3.6.1-intel-2015a-dmpar)
preparing... [DRY RUN]
[prepare_step method]
Defining build environment, based on toolchain (options) and specified dependencies...
Loading toolchain module...
module load icc/2015.1.133-GCC-4.9.2 [SIMULATED]
module load ifort/2015.1.133-GCC-4.9.2 [SIMULATED]
module load impi/5.0.2.044-iccifort-2015.1.133-GCC-4.9.2 [SIMULATED]
module load imkl/11.2.1.133-iimpi-7.2.3-GCC-4.9.2 [SIMULATED]
module load intel/2015a [SIMULATED]
Loading modules for dependencies...
module load JasPer/1.900.1-intel-2015a [SIMULATED]
module load netCDF/4.3.2-intel-2015a [SIMULATED]
module load netCDF-Fortran/4.4.0-intel-2015a [SIMULATED]
module load tcsh/6.18.01-intel-2015a [SIMULATED]
Full list of loaded modules:
(none)
!!!
!!! WARNING: Not all FFTW interface libraries ['fftw3xc_intel', 'mkl_intel_lp64', 'mkl_sequential', 'mkl_core'] are found in ['$EBROOTIMKL/mkl/lib/intel64', '$EBROOTIMKL/compiler/lib/intel64'], can't set $FFT_LIB.
!!!
Defining build environment...
export BLACS_INC_DIR=""
export BLACS_LIB_DIR=""
export BLACS_MT_STATIC_LIBS="libmkl_blacs_intelmpi_lp64.a"
export BLACS_STATIC_LIBS="libmkl_blacs_intelmpi_lp64.a"
export BLAS_INC_DIR=""
export BLAS_LAPACK_INC_DIR=""
export BLAS_LAPACK_LIB_DIR=""
export BLAS_LAPACK_MT_STATIC_LIBS="libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a"
export BLAS_LAPACK_STATIC_LIBS="libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a"
export BLAS_LIB_DIR=""
export BLAS_MT_STATIC_LIBS="libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a"
export BLAS_STATIC_LIBS="libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a"
export CC="icc"
export CFLAGS="-O2 -ftz -fp-speculation=safe -fp-model source"
export CPPFLAGS=""
export CXX="icpc"
export CXXFLAGS="-O2 -ftz -fp-speculation=safe -fp-model source"
export F77="ifort"
export F90="ifort"
export F90FLAGS="-O2 -ftz -fp-speculation=safe -fp-model source"
export FFLAGS="-O2 -ftz -fp-speculation=safe -fp-model source"
export FFTW_INC_DIR=""
export FFTW_LIB_DIR=""
export FFTW_STATIC_LIBS=""
export FFT_INC_DIR=""
export FFT_LIB_DIR=""
export FFT_STATIC_LIBS=""
export I_MPI_CC="icc"
export I_MPI_CXX="icpc"
export I_MPI_F77="ifort"
export I_MPI_F90="ifort"
export LAPACK_INC_DIR=""
export LAPACK_LIB_DIR=""
export LAPACK_MT_STATIC_LIBS="libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a"
export LAPACK_STATIC_LIBS="libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a"
export LDFLAGS=""
export LIBBLACS="-Wl,-Bstatic -Wl,--start-group -lmkl_blacs_intelmpi_lp64 -Wl,--end-group -Wl,-Bdynamic"
export LIBBLACS_MT="-Wl,-Bstatic -Wl,--start-group -lmkl_blacs_intelmpi_lp64 -Wl,--end-group -Wl,-Bdynamic"
export LIBBLAS="-Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic"
export LIBBLAS_MT="-Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread"
export LIBFFT=""
export LIBLAPACK="-Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic"
export LIBLAPACK_MT="-Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread"
export LIBLAPACK_MT_ONLY="-Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread"
export LIBLAPACK_ONLY="-Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic"
export LIBS="-liomp5 -lpthread"
export LIBSCALAPACK="-Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic"
export LIBSCALAPACK_MT="-Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64 -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread"
export LIBSCALAPACK_MT_ONLY="-Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread"
export LIBSCALAPACK_ONLY="-Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -Wl,--end-group -Wl,-Bdynamic"
export MPICC="mpicc"
export MPICH_CC="icc"
export MPICH_CXX="icpc"
export MPICH_F77="ifort"
export MPICH_F90="ifort"
export MPICXX="mpicxx"
export MPIF77="mpif77"
export MPIF90="mpif90"
export MPI_INC_DIR=""
export MPI_LIB_DIR=""
export MPI_LIB_SHARED=""
export MPI_LIB_STATIC=""
export OPTFLAGS="-O2"
export PRECFLAGS="-ftz -fp-speculation=safe -fp-model source"
export SCALAPACK_INC_DIR=""
export SCALAPACK_LIB_DIR=""
export SCALAPACK_MT_STATIC_LIBS="libmkl_scalapack_lp64.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a"
export SCALAPACK_STATIC_LIBS="libmkl_scalapack_lp64.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a"
configuring... [DRY RUN]
[configure_step method]
export NETCDF="$EBROOTNETCDF"
export NETCDFF="$EBROOTNETCDFMINFORTRAN"
export JASPERINC="$EBROOTJASPER/include"
export JASPERLIB="$EBROOTJASPER/lib"
export WRFIO_NCD_LARGE_FILE_SUPPORT="1"
Perl script patched: arch/Config_new.pl
running interactive command "./configure"
(in /home/example/eb/software/WRF/3.6.1-intel-2015a-dmpar/WRF-3.6.1)
applying regex substitutions to file configure.wrf
* regex pattern '^(DM_FC\s*=\s*).*$', replacement string '\1 mpif90'
* regex pattern '^(DM_CC\s*=\s*).*$', replacement string '\1 mpicc -DMPI2_SUPPORT'
* regex pattern '^(SFC\s*=\s*).*$', replacement string '\1 ifort'
* regex pattern '^(SCC\s*=\s*).*$', replacement string '\1 icc'
* regex pattern '^(CCOMP\s*=\s*).*$', replacement string '\1 icc'
applying regex substitutions to file configure.wrf
* regex pattern '^(FCOPTIM.*)(\s-O3)(\s.*)$', replacement string '\1 -O2 -ftz -fp-speculation=safe -fp-model source \3'
* regex pattern '^(CFLAGS_LOCAL.*)(\s-O3)(\s.*)$', replacement string '\1 -O2 -ftz -fp-speculation=safe -fp-model source \3'
building... [DRY RUN]
[build_step method]
running command "tcsh ./compile -j 4 wrf"
(in /home/example/eb/software/WRF/3.6.1-intel-2015a-dmpar/WRF-3.6.1)
running command "tcsh ./compile -j 4 em_real"
(in /home/example/eb/software/WRF/3.6.1-intel-2015a-dmpar/WRF-3.6.1)
running command "tcsh ./compile -j 4 em_b_wave"
(in /home/example/eb/software/WRF/3.6.1-intel-2015a-dmpar/WRF-3.6.1)
testing... [DRY RUN]
[test_step method]
export I_MPI_MPD_TMPDIR="/tmp/eb-Dh1wOp"
export PBS_ENVIRONMENT="PBS_BATCH_MPI"
export I_MPI_PROCESS_MANAGER="mpd"
file written: /tmp/eb-Dh1wOp/mpi_cmd_for-nzyh5V/mpdboot
file written: /tmp/eb-Dh1wOp/mpi_cmd_for-nzyh5V/nodes
export I_MPI_MPD_TMPDIR="/tmp/eb-Dh1wOp"
export PBS_ENVIRONMENT="PBS_BATCH_MPI"
export I_MPI_PROCESS_MANAGER="mpd"
file written: /tmp/eb-Dh1wOp/mpi_cmd_for-hIOEd_/mpdboot
file written: /tmp/eb-Dh1wOp/mpi_cmd_for-hIOEd_/nodes
installing... [DRY RUN]
[stage_install_step method]
[make_installdir method]
[install_step method]
taking care of extensions... [DRY RUN]
[extensions_step method]
postprocessing... [DRY RUN]
[post_install_step method]
sanity checking... [DRY RUN]
[sanity_check_step method]
Sanity check paths - file ['files']
* WRFV3/main/ideal.exe
* WRFV3/main/libwrflib.a
* WRFV3/main/ndown.exe
* WRFV3/main/nup.exe
* WRFV3/main/real.exe
* WRFV3/main/tc.exe
* WRFV3/main/wrf.exe
Sanity check paths - (non-empty) directory ['dirs']
* WRFV3/main
* WRFV3/run
Sanity check commands
(none)
cleaning up... [DRY RUN]
[cleanup_step method]
creating module... [DRY RUN]
[make_module_step method]
Generating module file /home/example/eb/modules/all/WRF/3.6.1-intel-2015a-dmpar, with contents:
#%Module
proc ModulesHelp { } {
puts stderr { The Weather Research and Forecasting (WRF) Model is a next-generation mesoscale
numerical weather prediction system designed to serve both operational forecasting and atmospheric
research needs. - Homepage: http://www.wrf-model.org
}
}
module-whatis {Description: The Weather Research and Forecasting (WRF) Model is a next-generation mesoscale
numerical weather prediction system designed to serve both operational forecasting and atmospheric
research needs. - Homepage: http://www.wrf-model.org}
set root /home/example/eb/software/WRF/3.6.1-intel-2015a-dmpar
conflict WRF
if { ![ is-loaded intel/2015a ] } {
module load intel/2015a
}
if { ![ is-loaded JasPer/1.900.1-intel-2015a ] } {
module load JasPer/1.900.1-intel-2015a
}
if { ![ is-loaded netCDF/4.3.2-intel-2015a ] } {
module load netCDF/4.3.2-intel-2015a
}
if { ![ is-loaded netCDF-Fortran/4.4.0-intel-2015a ] } {
module load netCDF-Fortran/4.4.0-intel-2015a
}
setenv EBROOTWRF "$root"
setenv EBVERSIONWRF "3.6.1"
setenv EBDEVELWRF "$root/easybuild/WRF-3.6.1-intel-2015a-dmpar-easybuild-devel"
setenv NETCDF "$EBROOTNETCDF"
setenv NETCDFF "$EBROOTNETCDFMINFORTRAN"
# Built with EasyBuild version 2.4.0
permissions... [DRY RUN]
[permissions_step method]
packaging... [DRY RUN]
[package_step method]
== COMPLETED: Installation ended successfully
Important note: the actual build & install procedure that will be performed may diverge
(slightly) from what is outlined above, due to conditions in the easyblock which are
incorrectly handled in a dry run.
Any errors that may occur are ignored and reported as warnings, on a per-step basis.
Please be aware of this, and only use the information above for quick debugging purposes.
(no ignored errors during dry run)
== Build succeeded for 1 out of 1
== Temporary log file(s) /tmp/eb-Dh1wOp/easybuild-0bu9u9.log* have been removed.
== Temporary directory /tmp/eb-Dh1wOp has been removed.
